Volume 6; Issue 1 Suppleme

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BMC Genetics
Volume 6; Issue 1 Suppleme

BMC Genetics

Volume 6; Issue 1 Suppleme

1

Genetic Analysis Workshop 14: microsatellite and single-nucleotide polymorphism marker loci for genome-wide scans

Joan E Bailey-Wilson, Laura Almasy, Mariza de Andrade, Julia Bailey, Heike Bickeböller, Heather J Cordell, E Warwick Daw, Lynn Goldin, Ellen L Goode, Courtney Gray-McGuire, Wayne Hening, Gail Jarvik,

Journal:

Year:

2005

Language:

english

File:

PDF, 440 KB

english, 2005

2

Linkage analysis of complex diseases using microsatellites and single-nucleotide polymorphisms: application to alcoholism

Jérémie Nsengimana, Hélène Renard, David Goldgar

Journal:

Year:

2005

Language:

english

File:

PDF, 1.17 MB

english, 2005

3

Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes and inferred haplotypes in the Genetic Analysis Workshop 14 simulated data

Caroline Durrant, Andrew P Morris

Journal:

Year:

2005

Language:

english

File:

PDF, 457 KB

english, 2005

4

Methods to test for association between a disease and a multi-allelic marker applied to a candidate region

Rachid El Galta, Li Hsu, Jeanine J Houwing-Duistermaat

Journal:

Year:

2005

Language:

english

File:

PDF, 444 KB

english, 2005

5

Identification of susceptibility loci for complex diseases in a case-control association study using the Genetic Analysis Workshop 14 dataset

Kimberly F Kerstann, Kevin Jacobs, Xiaohong (Rose) Yang, Andrew W Bergen, Lynn R Goldin, Alisa M Goldstein

Journal:

Year:

2005

Language:

english

File:

PDF, 929 KB

english, 2005

6

Comparisons of case-selection approaches based on allele sharing and/or disease severity index: application to the GAW14 simulated data

Chunyu Liu, L Adrienne Cupples, Josée Dupuis

Journal:

Year:

2005

Language:

english

File:

PDF, 737 KB

english, 2005

7

Hierarchical modeling in association studies of multiple phenotypes

Xin Liu, Eric Jorgenson, John S Witte

Journal:

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

8

Selecting cases from nuclear families for case-control association analysis

Rachael M Moore, Tracy Pinel, Jing Hua Zhao, Ruth March, Ansar Jawaid

Journal:

Year:

2005

Language:

english

File:

PDF, 819 KB

english, 2005

9

Combining evidence for association from transmission disequilibrium and case-control studies using single-nucleotide polymorphisms

Hein Putter, Jeanine J Houwing-Duistermaat, Nico JD Nagelkerke

Journal:

Year:

2005

Language:

english

File:

PDF, 444 KB

english, 2005

10

Robust trend tests for genetic association in case-control studies using family data

Xin Tian, Jungnam Joo, Gang Zheng, Jing-Ping Lin

Journal:

Year:

2005

Language:

english

File:

PDF, 483 KB

english, 2005

11

How to quantify information loss due to phase ambiguity in haplotype case-control studies

Hae-Won Uh, Jeanine J Houwing-Duistermaat, Hein Putter, Hans C vanHouwelingen

Journal:

Year:

2005

Language:

english

File:

PDF, 572 KB

english, 2005

12

Effects of population structure on genetic association studies

Hongyan Xu, Sanjay Shete

Journal:

Year:

2005

Language:

english

File:

PDF, 661 KB

english, 2005

13

Comparison of marker types and map assumptions using Markov chain Monte Carlo-based linkage analysis of COGA data

Weiva Sieh, Saonli Basu, Audrey Q Fu, Joseph H Rothstein, Paul A Scheet, William CL Stewart, Yun J Sung, Elizabeth A Thompson, Ellen M Wijsman

Journal:

Year:

2005

Language:

english

File:

PDF, 507 KB

english, 2005

14

A new family-based association test via a least-squares method

Song Yang, Jungnam Joo, Ziding Feng, Jing-Ping Lin

Journal:

Year:

2005

Language:

english

File:

PDF, 453 KB

english, 2005

15

Smoothing of the bivariate LOD score for non-normal quantitative traits

Alfonso Buil, Thomas D Dyer, Laura Almasy, John Blangero

Journal:

Year:

2005

Language:

english

File:

PDF, 652 KB

english, 2005

16

Identification of genes involved in alcohol consumption and cigarettes smoking

Mariza de Andrade, Curtis L Olswold, Joshua P Slusser, Larry A Tordsen, Elizabeth J Atkinson, Kari G Rabe, Susan L Slager

Journal:

Year:

2005

Language:

english

File:

PDF, 498 KB

english, 2005

17

A power study of bivariate LOD score analysis of a complex trait and fear/discomfort with strangers

Fei Ji, Dayoung Lee, Nancy Role Mendell

Journal:

Year:

2005

Language:

english

File:

PDF, 468 KB

english, 2005

18

Bivariate genome scans incorporating factor and principal component analyses to identify common genetic components of alcoholism, event-related potential, and electroencephalogram phenotypes

Jing-Ping Lin, Colin Wu

Journal:

Year:

2005

Language:

english

File:

PDF, 462 KB

english, 2005

19

Genomic screening in family-based association testing

Amy Murphy, Matthew B McQueen, Jessica Su, Peter Kraft, Ross Lazarus, Nan M Laird, Christoph Lange, Kristel Van Steen

Journal:

Year:

2005

Language:

english

File:

PDF, 462 KB

english, 2005

20

A Bayesian genome screening of maximum number of drinks as an alcoholism phenotype with the new Haseman-Elston method

Cheongeun Oh, Shuang Wang, Nianjun Liu, Liang Chen, Hongyu Zhao

Journal:

Year:

2005

Language:

english

File:

PDF, 505 KB

english, 2005

21

A comparison of univariate, bivariate, and trivariate whole-genome linkage screens of genetically correlated electrophysiological endophenotypes

Diane M Warren, Thomas D Dyer, Charles P Peterson, Michael C Mahaney, John Blangero, Laura Almasy

Journal:

Year:

2005

Language:

english

File:

PDF, 526 KB

english, 2005

22

Multivariate linkage analysis using the electrophysiological phenotypes in the COGA alcoholism data

Heping Zhang, Xiaoyun Zhong, Yuanqing Ye

Journal:

Year:

2005

Language:

english

File:

PDF, 487 KB

english, 2005

23

Genes, age, and alcoholism: analysis of GAW14 data

Victor Apprey, Joseph Afful, Jules P Harrell, Robert E Taylor, George E Bonney

Journal:

Year:

2005

Language:

english

File:

PDF, 456 KB

english, 2005

24

Genome-wide linkage analysis of age at onset of alcohol dependence: a comparison between microsatellites and single-nucleotide polymorphisms

Bamidele O Tayo, Yulan Liang, Saverio Stranges, Maurizio Trevisan

Journal:

Year:

2005

Language:

english

File:

PDF, 1.03 MB

english, 2005

25

Effect of genotype × alcoholism interaction on linkage analysis of an alcoholism-related quantitative phenotype

Rector Arya, Thomas D Dyer, Diane M Warren, Christopher P Jenkinson, Ravindranath Duggirala, Laura Almasy

Journal:

Year:

2005

Language:

english

File:

PDF, 660 KB

english, 2005

26

Two novel quantitative trait linkage analysis statistics based on the posterior probability of linkage: application to the COGA families

Christopher W Bartlett, Veronica J Vieland

Journal:

Year:

2005

Language:

english

File:

PDF, 521 KB

english, 2005

27

Microsatellites versus single-nucleotide polymorphisms in linkage analysis for quantitative and qualitative measures

Gerald Dunn, Anthony L Hinrichs, Sarah Bertelsen, Carol H Jin, John SK Kauwe, Brian K Suarez, Laura J Bierut

Journal:

Year:

2005

Language:

english

File:

PDF, 581 KB

english, 2005

28

Quantitative trait locus-specific genotype × alcoholism interaction on linkage for evoked electroencephalogram oscillations

Lisa J Martin, Christy L Avery, Jeff T Williams, Kari E North

Journal:

Year:

2005

Language:

english

File:

PDF, 529 KB

english, 2005

29

Genetic analysis of the maximum drinks phenotype

Scott F Saccone, Nancy L Saccone, Rosalind J Neuman, John P Rice

Journal:

Year:

2005

Language:

english

File:

PDF, 448 KB

english, 2005

30

COGA phenotypes and linkages on chromosome 2

Howard W Wiener, Rodney CP Go, Hemant Tiwari, Varghese George, Grier P Page

Journal:

Year:

2005

Language:

english

File:

PDF, 544 KB

english, 2005

31

A study of genetic association with electrophysiological measures related to alcoholism: GAW14 data

Ao Yuan, Victor Apprey, Jules P Harrell, Robert E Taylor, George E Bonney

Journal:

Year:

2005

Language:

english

File:

PDF, 451 KB

english, 2005

32

Mixed-effects Cox models of alcohol dependence in extended families

Journal:

Year:

2005

Language:

english

File:

PDF, 455 KB

english, 2005

33

A genome-wide linkage and association study using COGA data

Xiaofeng Zhu, Richard Cooper, Donghui Kan, Guichan Cao, Xiaodong Wu

Journal:

Year:

2005

Language:

english

File:

PDF, 447 KB

english, 2005

34

An artificial neural network for estimating haplotype frequencies

Kevin C Cartier, Daniel Baechle

Journal:

Year:

2005

Language:

english

File:

PDF, 1.23 MB

english, 2005

35

Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses

Ayse Ulgen, Wentian Li

Journal:

Year:

2005

Language:

english

File:

PDF, 566 KB

english, 2005

36

Whole-genome association studies on alcoholism comparing different phenotypes using single-nucleotide polymorphisms and microsatellites

Liang Chen, Nianjun Liu, Shuang Wang, Cheongeun Oh, Nicholas J Carriero, Hongyu Zhao

Journal:

Year:

2005

Language:

english

File:

PDF, 452 KB

english, 2005

37

Diagnosis of alcoholism based on neural network analysis of phenotypic risk factors

Catherine T Falk

Journal:

Year:

2005

Language:

english

File:

PDF, 429 KB

english, 2005

38

Boosting alternating decision trees modeling of disease trait information

Kuang-Yu Liu, Jennifer Lin, Xiaobo Zhou, Stephen TC Wong

Journal:

Year:

2005

Language:

english

File:

PDF, 483 KB

english, 2005

39

Data mining of the GAW14 simulated data using rough set theory and tree-based methods

Liang-Ying Wei, Cheng-Lung Huang, Chien-Hsiun Chen

Journal:

Year:

2005

Language:

english

File:

PDF, 966 KB

english, 2005

40

Power and type I error rate of false discovery rate approaches in genome-wide association studies

Qiong Yang, Jing Cui, Irmarie Chazaro, L Adrienne Cupples, Serkalem Demissie

Journal:

Year:

2005

Language:

english

File:

PDF, 441 KB

english, 2005

41

A genome-wide tree- and forest-based association analysis of comorbidity of alcoholism and smoking

Yuanqing Ye, Xiaoyun Zhong, Heping Zhang

Journal:

Year:

2005

Language:

english

File:

PDF, 646 KB

english, 2005

42

Analysis of alcoholism data using support vector machines

Robert Yu, Sanjay Shete

Journal:

Year:

2005

Language:

english

File:

PDF, 456 KB

english, 2005

43

Use of susceptibility scoring in conjunction with the genotypic transmission disequilibrium test

Kelly S Benke, Gary A Chase, Daniele M Fallin

Journal:

Year:

2005

Language:

english

File:

PDF, 437 KB

english, 2005

44

A new Bayesian approach incorporating covariate information for heterogeneity and its comparison with HLOD

Swati Biswas, Shili Lin, Donald A Berry

Journal:

Year:

2005

Language:

english

File:

PDF, 457 KB

english, 2005

45

Construction of endophenotypes for complex diseases in the presence of heterogeneity

Chien-Hsiun Chen, Chih-Ling Kuo, Michael CP Lin, Yu-Jen Liang, Cathy SJ Fann

Journal:

Year:

2005

Language:

english

File:

PDF, 648 KB

english, 2005

46

Linkage analysis of the GAW14 simulated dataset with microsatellite and single-nucleotide polymorphism markers in large pedigrees

Xiaohong (Rose) Yang, Kevin Jacobs, Kimberly F Kerstann, Andrew W Bergen, Alisa M Goldstein, Lynn R Goldin

Journal:

Year:

2005

Language:

english

File:

PDF, 455 KB

english, 2005

47

Impact of the diagnosis definition on linkage detection

Marie-Hélène Dizier, Emmanuelle Génin, Marie Claude Babron, Catherine Bourgain

Journal:

Year:

2005

Language:

english

File:

PDF, 448 KB

english, 2005

48

Performance comparison of two-point linkage methods using microsatellite markers flanking known disease locations

Mark W Logue, Andrew W George, M Anne Spence, Veronica J Vieland

Journal:

Year:

2005

Language:

english

File:

PDF, 453 KB

english, 2005

49

Standard linkage and association methods identify the mechanism of four susceptibility genes for a simulated complex disease

Nathan Pankratz, Ellen Edenberg, Tatiana Foroud

Journal:

Year:

2005

Language:

english

File:

PDF, 552 KB

english, 2005

50

Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage

Brian H Reck, Nandita Mukhopadhyay, Hui-Ju Tsai, Daniel E Weeks

Journal:

Year:

2005

Language:

english

File:

PDF, 686 KB

english, 2005

51

Methods for detecting gene × gene interaction in multiplex extended pedigrees

Guy N Brock, Brion S Maher, Toby H Goldstein, Margaret E Cooper, Mary L Marazita

Journal:

Year:

2005

Language:

english

File:

PDF, 464 KB

english, 2005

52

Extension of multifactor dimensionality reduction for identifying multilocus effects in the GAW14 simulated data

Hao Mei, Deqiong Ma, Allison Ashley-Koch, Eden R Martin

Journal:

Year:

2005

Language:

english

File:

PDF, 446 KB

english, 2005

53

Multifactor-dimensionality reduction versus family-based association tests in detecting susceptibility loci in discordant sib-pair studies

Yan Meng, Qianli Ma, Yi Yu, John Farrell, Lindsay A Farrer, Marsha A Wilcox

Journal:

Year:

2005

Language:

english

File:

PDF, 454 KB

english, 2005

54

Identifying susceptibility genes by using joint tests of association and linkage and accounting for epistasis

Joshua Millstein, Kimberly D Siegmund, David V Conti, W James Gauderman

Journal:

Year:

2005

Language:

english

File:

PDF, 695 KB

english, 2005

55

Searching for epistatic interactions in nuclear families using conditional linkage analysis

Svati H Shah, Michael A Schmidt, Hao Mei, William K Scott, Elizabeth R Hauser, Silke Schmidt

Journal:

Year:

2005

Language:

english

File:

PDF, 455 KB

english, 2005

56

Analysis of genes for alcoholism using two-disease-locus models

Chih-Chieh Wu, Sanjay Shete

Journal:

Year:

2005

Language:

english

File:

PDF, 445 KB

english, 2005

57

Whole-genome variance components linkage analysis using single-nucleotide polymorphisms versus microsatellites on quantitative traits of derived phenotypes from factor analysis of electroencephalogram waves

Yi Yu, Yan Meng, Qianli Ma, John Farrell, Lindsay A Farrer, Marsha A Wilcox

Journal:

Year:

2005

Language:

english

File:

PDF, 848 KB

english, 2005

58

Precision and type I error rate in the presence of genotype errors and missing parental data: a comparison between the original transmission disequilibrium test (TDT) and TDTae statistics

Sandra Barral, Chad Haynes, Mark A Levenstien, Derek Gordon

Journal:

Year:

2005

Language:

english

File:

PDF, 467 KB

english, 2005

59

The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets

Pamela A McCaskie, Kim W Carter, Simon R McCaskie, Lyle J Palmer

Journal:

Year:

2005

Language:

english

File:

PDF, 1.38 MB

english, 2005

60

An analysis of identical single-nucleotide polymorphisms genotyped by two different platforms

Brian K Suarez, Chelsea Taylor, Sarah Bertelsen, Laura J Bierut, Gerald Dunn, Carol H Jin, John SK Kauwe, Andrew D Paterson, Anthony L Hinrichs

Journal:

Year:

2005

Language:

english

File:

PDF, 522 KB

english, 2005

61

Effect of genotyping error in model-free linkage analysis using microsatellite or single-nucleotide polymorphism marker maps

Cheryl L Thompson, Dan Baechle, Qing Lu, George Mathew, Yeunjoo Song, Sudha K Iyengar, Courtney Gray-McGuire, Katrina AB Goddard

Journal:

Year:

2005

Language:

english

File:

PDF, 471 KB

english, 2005

62

Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research

Nathan L Tintle, Kwangmi Ahn, Nancy Role Mendell, Derek Gordon, Stephen J Finch

Journal:

Year:

2005

Language:

english

File:

PDF, 448 KB

english, 2005

63

Evaluating outlier loci and their effect on the identification of pedigree errors

Ke-Sheng Wang, Michelle Liu, Andrew D Paterson

Journal:

Year:

2005

Language:

english

File:

PDF, 456 KB

english, 2005

64

Linkage analysis of alcoholism-related electrophysiological phenotypes: genome scans with microsatellites compared to single-nucleotide polymorphisms

Jocelyn F Bautista, Shannon RE Quade, Antonio R Parrado, Katrina AB Goddard

Journal:

Year:

2005

Language:

english

File:

PDF, 506 KB

english, 2005

65

X chromosome effects and their interactions with mitochondrial effects

Jack W Kent, Loren R Lease, Michael C Mahaney, Thomas D Dyer, Laura Almasy, John Blangero

Journal:

Year:

2005

Language:

english

File:

PDF, 466 KB

english, 2005

66

Mitochondrial genetic effects on latent class variables associated with susceptibility to alcoholism

Loren R Lease, Deidre A Winnier, Jeff T Williams, Thomas D Dyer, Laura Almasy, Michael C Mahaney

Journal:

Year:

2005

Language:

english

File:

PDF, 466 KB

english, 2005

67

A simple nonparametric multipoint procedure to test for linkage through mothers or fathers as well as imprinting effects in the presence of linkage

Journal:

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

68

Which strategy is better for linkage analysis: single-nucleotide polymorphisms or microsatellites? Evaluation by identity-by-state – identity-by-descent transformation affected sib-pair method on GAW14 data

Qingqi Yue, Victor Apprey, George E Bonney

Journal:

Year:

2005

Language:

english

File:

PDF, 733 KB

english, 2005

69

A genome scan for parent-of-origin linkage effects in alcoholism

Xiao-Qing Liu, Celia MT Greenwood, Ke-Sheng Wang, Andrew D Paterson

Journal:

Year:

2005

Language:

english

File:

PDF, 732 KB

english, 2005

70

Genetic imprinting analysis for alcoholism genes using variance components approach

Sanjay Shete, Robert Yu

Journal:

Year:

2005

Language:

english

File:

PDF, 502 KB

english, 2005

71

Linkage analysis of alcohol dependence using MOD scores

Konstantin Strauch, Robert Fürst, Franz Rüschendorf, Christine Windemuth, Johannes Dietter, Antonia Flaquer, Max P Baur, Thomas F Wienker

Journal:

Year:

2005

Language:

english

File:

PDF, 576 KB

english, 2005

72

A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures

Chun Zhang, Simon Cawley, Guoying Liu, Manqiu Cao, Harley Gorrell, Giulia C Kennedy

Journal:

Year:

2005

Language:

english

File:

PDF, 497 KB

english, 2005

73

Detection of susceptibility loci by genome-wide linkage analysis

Marie-Claude Babron, Catherine Bourgain, Anne-Louise Leutenegger, Françoise Clerget-Darpoux

Journal:

Year:

2005

Language:

english

File:

PDF, 437 KB

english, 2005

74

Linkage mapping of a complex trait in the New York population of the GAW14 simulated dataset: a multivariate phenotype approach

Saurabh Ghosh, Samsiddhi Bhattacharjee, Gourab Basu, Sandip Pal, Partha P Majumder

Journal:

Year:

2005

Language:

english

File:

PDF, 453 KB

english, 2005

75

Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14

Howard J Edenberg, Laura J Bierut, Paul Boyce, Manqiu Cao, Simon Cawley, Richard Chiles, Kimberly F Doheny, Mark Hansen, Tony Hinrichs, Kevin Jones, Mark Kelleher, Giulia C Kennedy, Guoying Liu, Grego

Journal:

Year:

2005

Language:

english

File:

PDF, 512 KB

english, 2005

76

Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Alison P Klein, Ya-Yu Tsai, Priya Duggal, Elizabeth M Gillanders, Michael Barnhart, Rasika A Mathias, Ian P Dusenberry, Amy Turiff, Peter S Chines, Janet Goldstein, Robert Wojciechowski, Wayne Hening,

Journal:

Year:

2005

Language:

english

File:

PDF, 458 KB

english, 2005

77

Interval estimation of disease loci: development and applications of new linkage methods

Charalampos Papachristou, Shili Lin

Journal:

Year:

2005

Language:

english

File:

PDF, 1.49 MB

english, 2005

78

Inclusion of unaffected sibs increases power in model-free linkage analysis of a behavioral trait

Sabine Plancoulaine, Alexandre Alcaïs, Yue Chen, Laurent Abel, France Gagnon

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Year:

2005

Language:

english

File:

PDF, 468 KB

english, 2005

79

Resampling methods to reduce the selection bias in genetic effect estimation in genome-wide scans

Long Yang Wu, Sophia SF Lee, Haijiang Steven Shi, Lei Sun, Shelley B Bull

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Year:

2005

Language:

english

File:

PDF, 578 KB

english, 2005

80

Linkage and association analyses of microsatellites and single-nucleotide polymorphisms in nuclear families

Jennifer Lin, Kuang-Yu Liu

Journal:

Year:

2005

Language:

english

File:

PDF, 443 KB

english, 2005

81

Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure

Nianjun Liu, Liang Chen, Shuang Wang, Cheongeun Oh, Hongyu Zhao

Journal:

Year:

2005

Language:

english

File:

PDF, 653 KB

english, 2005

82

A comparison between microsatellite and single-nucleotide polymorphism markers with respect to two measures of information content

Anbupalam Thalamuthu, Indranil Mukhopadhyay, Amrita Ray, Daniel E Weeks

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Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

83

Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites

Shuang Wang, Song Huang, Nianjun Liu, Liang Chen, Cheongeun Oh, Hongyu Zhao

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Year:

2005

Language:

english

File:

PDF, 469 KB

english, 2005

84

Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis

Chao Xing, Fredrick R Schumacher, Guan Xing, Qing Lu, Tao Wang, Robert C Elston

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Year:

2005

Language:

english

File:

PDF, 691 KB

english, 2005

85

Construction of the model for the Genetic Analysis Workshop 14 simulated data: genotype-phenotype relationships, gene interaction, linkage, association, disequilibrium, and ascertainment effects for a complex phenotype

David A Greenberg, Junying Zhang, Dvora Shmulewitz, Lisa J Strug, Regina Zimmerman, Veena Singh, Sudhir Marathe

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Year:

2005

Language:

english

File:

PDF, 543 KB

english, 2005

86

A genome-wide scanning and fine mapping study of COGA data

Hsin-Chou Yang, Chien-Ching Chang, Chin-Yu Lin, Chun-Liang Chen, Chin-Yu Lin, Cathy SJ Fann

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Year:

2005

Language:

english

File:

PDF, 802 KB

english, 2005

87

Linkage analysis and association analysis in the presence of linkage using age at onset of COGA alcoholism data

Xiaoyun Zhong, Heping Zhang

Journal:

Year:

2005

Language:

english

File:

PDF, 460 KB

english, 2005

88

Single-nucleotide polymorphism versus microsatellite markers in a combined linkage and segregation analysis of a quantitative trait

E Warwick Daw, Simon C Heath, Yue Lu

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Year:

2005

Language:

english

File:

PDF, 433 KB

english, 2005

89

Application of the propensity score in a covariate-based linkage analysis of the Collaborative Study on the Genetics of Alcoholism

Betty Q Doan, Constantine E Frangakis, Yin Y Shugart, Joan E Bailey-Wilson

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Year:

2005

Language:

english

File:

PDF, 894 KB

english, 2005

90

Multipoint identity-by-descent computations for single-point polymorphism and microsatellite maps

Anthony L Hinrichs, Sarah Bertelsen, Laura J Bierut, Gerald Dunn, Carol H Jin, John S Kauwe, Brian K Suarez

Journal:

Year:

2005

Language:

english

File:

PDF, 674 KB

english, 2005

91

Simulation-based homozygosity mapping with the GAW14 COGA dataset on alcoholism

Ondrej Libiger, Nicholas J Schork

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Year:

2005

Language:

english

File:

PDF, 488 KB

english, 2005

92

Linkage analysis of alcohol dependence using both affected and discordant sib pairs

Pei-Ying Shih, Tao Wang, Chao Xing, Moumita Sinha, Yeunjoo Song, Robert C Elston

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Year:

2005

Language:

english

File:

PDF, 565 KB

english, 2005

93

Multilocus and interaction-based genome scan for alcoholism risk factors in Caucasian Americans: the COGA study

Adrienne H Williams, W Mark Brown, Carl D Langefeld

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Year:

2005

Language:

english

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PDF, 804 KB

english, 2005

94

Recursive partitioning models for linkage in COGA data

Wei Xu, Chelsea Taylor, Justin Veenstra, Shelley B Bull, Mary Corey, Celia MT Greenwood

Journal:

Year:

2005

Language:

english

File:

PDF, 528 KB

english, 2005

95

A Bayesian approach for applying Haseman-Elston methods

Seungtai Yoon, Young Ju Suh, Nancy Role Mendell, Kenny Qian Ye

Journal:

Year:

2005

Language:

english

File:

PDF, 501 KB

english, 2005

96

Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7

Guanjie Chen, Adebowale Adeyemo, Jie Zhou, Ao Yuan, Yuanxiu Chen, Charles Rotimi

Journal:

Year:

2005

Language:

english

File:

PDF, 541 KB

english, 2005

97

Linkage analysis of GAW14 simulated data: comparison of multimarker, multipoint, and conditional approaches

Mathew J Barber, Eleanor Wheeler, Heather J Cordell

Journal:

Year:

2005

Language:

english

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english, 2005

98

Genome-wide linkage and association mapping of disease genes with the GAW14 simulated datasets

Kim W Carter, Pamela A McCaskie, Lyle J Palmer

Journal:

Year:

2005

Language:

english

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PDF, 850 KB

english, 2005

99

Identifying genomic regions for fine-mapping using genome scan meta-analysis (GSMA) to identify the minimum regions of maximum significance (MRMS) across populations

Margaret E Cooper, Toby H Goldstein, Brion S Maher, Mary L Marazita

Journal:

Year:

2005

Language:

english

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PDF, 461 KB

english, 2005

100

An updated meta-analysis approach for genetic linkage

Carol J Etzel, Mei Liu, Tracy J Costello

Journal:

Year:

2005

Language:

english

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PDF, 826 KB

english, 2005

101

Calculation of multipoint likelihoods using flanking marker data: a simulation study

Andrew W George, LaVonne A Mangin, Christopher W Bartlett, Mark W Logue, Alberto M Segre, Veronica J Vieland

Journal:

Year:

2005

Language:

english

File:

PDF, 996 KB

english, 2005

102

Covariate linkage analysis of GAW14 simulated data incorporating subclinical phenotype, sex, population, parent-of-origin, and interaction

Marian L Hamshere, Stuart MacGregor, Valentina Moskvina, Ivan N Nikolov, Peter A Holmans

Journal:

Year:

2005

Language:

english

File:

PDF, 466 KB

english, 2005

103

Modeling the effect of an associated single-nucleotide polymorphism in linkage studies

Jeanine J Houwing-Duistermaat, Hae-Won Uh, Jeremie JP Lebrec, Hein Putter, Li Hsu

Journal:

Year:

2005

Language:

english

File:

PDF, 440 KB

english, 2005

104

A gene-model-free method for linkage analysis of a disease-related-trait based on analysis of proband/sibling pairs

Heejong Sung, Stephen J Finch, Kenny Q Ye, Nancy R Mendell

Journal:

Year:

2005

Language:

english

File:

PDF, 585 KB

english, 2005

105

The role of parametric linkage methods in complex trait analyses using microsatellites

Michael D Badzioch, Ellen L Goode, Gail P Jarvik

Journal:

Year:

2005

Language:

english

File:

PDF, 457 KB

english, 2005

106

Including endophenotypes as covariates in variance component heritability and linkage analysis

Journal:

Year:

2005

Language:

english

File:

PDF, 436 KB

english, 2005

107

Comparison of single-nucleotide polymorphisms and microsatellites in detecting quantitative trait loci for alcoholism: The Collaborative Study on the Genetics of Alcoholism

Helen Kim, Carolyn M Hutter, Stephanie A Monks, Karen L Edwards

Journal:

Year:

2005

Language:

english

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PDF, 654 KB

english, 2005

108

Haseman-Elston weighted by marker informativity

Daniel Franke, André Kleensang, Robert C Elston, Andreas Ziegler

Journal:

Year:

2005

Language:

english

File:

PDF, 467 KB

english, 2005

109

Whole-genome association analysis to identify markers associated with recombination rates using single-nucleotide polymorphisms and microsatellites

Song Huang, Shuang Wang, Nianjun Liu, Liang Chen, Cheongeun Oh, Hongyu Zhao

Journal:

Year:

2005

Language:

english

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PDF, 473 KB

english, 2005

110

On normality, ethnicity, and missing values in quantitative trait locus mapping

Aurélie Labbe, Hanna Wormald

Journal:

Year:

2005

Language:

english

File:

PDF, 471 KB

english, 2005

111

Application of a rank-based genetic association test to age-at-onset data from the Collaborative Study on the Genetics of Alcoholism study

Yi-Ju Li, Eden R Martin, Ling Zhang, Andrew S Allen

Journal:

Year:

2005

Language:

english

File:

PDF, 657 KB

english, 2005

112

Critical values and variation in type I error along chromosomes in the COGA dataset using the applied pseudo-trait method

George J Papanicolaou, Cristina M Justice, Illija M Kovac, Alexa JM Sorant, Alexander F Wilson

Journal:

Year:

2005

Language:

english

File:

PDF, 441 KB

english, 2005

113

Surrogate phenotype definition for alcohol use disorders: a genome-wide search for linkage and association

Albert Rosenberger, Nico Janicke, Karola Köhler, Katrin Korb, Bettina Kulle, Heike Bickeböller

Journal:

Year:

2005

Language:

english

File:

PDF, 1.06 MB

english, 2005

114

Application of the regression of offspring on mid-parent method to detect associations between single-nucleotide polymorphisms and the beta 2 electroencephalogram phenotype in the COGA data

Marie-Hélène Roy-Gagnon, Rasika A Mathias, Alexander F Wilson

Journal:

Year:

2005

Language:

english

File:

PDF, 627 KB

english, 2005

115

A comparison of discrete versus continuous environment in a variance components-based linkage analysis of the COGA data

Kevin R Viel, Diane M Warren, Alfonso Buil, Thomas D Dyer, Tom E Howard, Laura Almasy

Journal:

Year:

2005

Language:

english

File:

PDF, 453 KB

english, 2005

116

A variance component analysis on recombination rate in the COGA pedigrees

Lin Wang, Xin Xu

Journal:

Year:

2005

Language:

english

File:

PDF, 483 KB

english, 2005

117

Linkage and association analysis in pedigrees from different populations

Joseph Beyene, Jun Yan, Celia MT Greenwood

Journal:

Year:

2005

Language:

english

File:

PDF, 443 KB

english, 2005

118

The effect of linkage disequilibrium on linkage analysis of incomplete pedigrees

Douglas F Levinson, Peter Holmans

Journal:

Year:

2005

Language:

english

File:

PDF, 656 KB

english, 2005

119

Locally weighted transmission/disequilibrium test for genetic association analysis

Li Hsu, Xuesong Yu, Jeanine J Houwing-Duistermaat, Hae-Won Uh, Rachid El Galta, Jeremie JP Lebrec, Hua Tang

Journal:

Year:

2005

Language:

english

File:

PDF, 479 KB

english, 2005

120

Optimizing the evidence for linkage by permuting marker order

Gyungah Jun, Yeunjoo Song, Sudha K Iyengar, Robert C Elston

Journal:

Year:

2005

Language:

english

File:

PDF, 882 KB

english, 2005

121

Comparison of family-based association tests in chromosome regions selected by linkage-based confidence intervals

Juan Pablo Lewinger, Sophia SF Lee, Joanna Biernacka, Long Yang Wu, Haijiang Steven Shi, Shelley B Bull

Journal:

Year:

2005

Language:

english

File:

PDF, 491 KB

english, 2005

122

Fine mapping – 19th century style

John Molitor, Keyan Zhao, Paul Marjoram

Journal:

Year:

2005

Language:

english

File:

PDF, 637 KB

english, 2005

123

Potts model for haplotype associations

Elena V Moltchanova, Janne Pitkäniemi, Laura Haapala

Journal:

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

124

Comparison of genotype- and haplotype-based approaches for fine-mapping of alcohol dependence using COGA data

Dushanthi Pinnaduwage, Laurent Briollais

Journal:

Year:

2005

Language:

english

File:

PDF, 520 KB

english, 2005

125

Will the real disease gene please stand up?

Neil Shephard, Sally John, Lon Cardon, Mark I McCarthy, Eleftheria Zeggini

Journal:

Year:

2005

Language:

english

File:

PDF, 479 KB

english, 2005

126

Fine-mapping using the weighted average method for a case-control study

Kijoung Song, Mohammed S Orloff, Qing Lu, Robert C Elston

Journal:

Year:

2005

Language:

english

File:

PDF, 650 KB

english, 2005

127

Application of family-based association testing to assess the genotype-phenotype association involved in complex traits using single-nucleotide polymorphisms

Ming-Hsi Wang, Mitchell Guo, Yin Y Shugart

Journal:

Year:

2005

Language:

english

File:

PDF, 638 KB

english, 2005

128

Robust testing of haplotype/disease association

Andrew S Allen, Glen A Satten

Journal:

Year:

2005

Language:

english

File:

PDF, 467 KB

english, 2005

129

Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype

Hsiu-Fen Lin, Suh-Hang Hank Juo, Rong Cheng

Journal:

Year:

2005

Language:

english

File:

PDF, 654 KB

english, 2005

130

Haplotype-sharing analysis using Mantel statistics for combined genetic effects

Lars Beckmann, Christine Fischer, Markus Obreiter, Michael Rabes, Jenny Chang-Claude

Journal:

Year:

2005

Language:

english

File:

PDF, 461 KB

english, 2005

131

A comparison of five methods for selecting tagging single-nucleotide polymorphisms

Kelly M Burkett, Mercedeh Ghadessi, Brad McNeney, Jinko Graham, Denise Daley

Journal:

Year:

2005

Language:

english

File:

PDF, 444 KB

english, 2005

132

Strategies for selecting subsets of single-nucleotide polymorphisms to genotype in association studies

Joe M Butler, D Timothy Bishop, Jennifer H Barrett

Journal:

Year:

2005

Language:

english

File:

PDF, 533 KB

english, 2005

133

Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium

Priya Duggal, Elizabeth M Gillanders, Rasika A Mathias, Grace P Ibay, Alison P Klein, Agnes B Baffoe-Bonnie, Liang Ou, Ian P Dusenberry, Ya-Yu Tsai, Peter S Chines, Betty Q Doan, Joan E Bailey-Wilson

Journal:

Year:

2005

Language:

english

File:

PDF, 785 KB

english, 2005

134

Haplotype-sharing analysis for alcohol dependence based on quantitative traits and the Mantel statistic

Andre Kleensang, Daniel Franke, Inke R König, Andreas Ziegler

Journal:

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

135

Comparisons of methods for linkage analysis and haplotype reconstruction using extended pedigree data

Shili Lin, Jie Ding, Crystal Dong, Zhenqiu Liu, Zhenxu J Ma, Shuyan Wan, Yan Xu

Journal:

Year:

2005

Language:

english

File:

PDF, 475 KB

english, 2005

136

Haplotypic structure of the X chromosome in the COGA population sample and the quality of its reconstruction by extant software packages

Fabio Marroni, Chiara Toni, Benedetto Pennato, Ya-Yu Tsai, Pryia Duggal, Joan E Bailey-Wilson, Silvano Presciuttini

Journal:

Year:

2005

Language:

english

File:

PDF, 555 KB

english, 2005

137

Comparison of type I error for multiple test corrections in large single-nucleotide polymorphism studies using principal components versus haplotype blocking algorithms

Kristin K Nicodemus, Wenlei Liu, Gary A Chase, Ya-Yu Tsai, M Daniele Fallin

Journal:

Year:

2005

Language:

english

File:

PDF, 441 KB

english, 2005

138

Haplotype sharing correlation of alcohol dependence on chromosomes 1–6 in 93 nuclear families

Journal:

Year:

2005

Language:

english

File:

PDF, 481 KB

english, 2005

139

Genome-wide linkage analysis for alcohol dependence: a comparison between single-nucleotide polymorphism and microsatellite marker assays

Qianli Ma, Yi Yu, Yan Meng, John Farrell, Lindsay A Farrer, Marsha A Wilcox

Journal:

Year:

2005

Language:

english

File:

PDF, 1.40 MB

english, 2005

140

Accuracy of haplotype estimation in a region of low linkage disequilibrium

Christy L Avery, Lisa J Martin, Jeff T Williams, Kari E North

Journal:

Year:

2005

Language:

english

File:

PDF, 573 KB

english, 2005

141

An exploration of sex-specific linkage disequilibrium on chromosome X in Caucasians from the COGA study

Miranda E Cox, Joel K Campbell, Carl D Langefeld

Journal:

Year:

2005

Language:

english

File:

PDF, 1.12 MB

english, 2005

142

Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium

Ellen L Goode, Michael D Badzioch, Gail P Jarvik

Journal:

Year:

2005

Language:

english

File:

PDF, 744 KB

english, 2005

143

Examining the effect of linkage disequilibrium on multipoint linkage analysis

Qiqing Huang, Sanjay Shete, Michael Swartz, Christopher I Amos

Journal:

Year:

2005

Language:

english

File:

PDF, 458 KB

english, 2005

144

The efficacy of short tandem repeat polymorphisms versus single-nucleotide polymorphisms for resolving population structure

John SK Kauwe, Sarah Bertelsen, Laura Jean Bierut, Gerald Dunn, Anthony L Hinrichs, Carol H Jin, Brian K Suarez

Journal:

Year:

2005

Language:

english

File:

PDF, 782 KB

english, 2005

145

Evaluation of linkage disequilibrium and its effect on non-parametric multipoint linkage analysis using two high density single-nucleotide polymorphism mapping panels

Sarah Shaw Murray

Journal:

Year:

2005

Language:

english

File:

PDF, 799 KB

english, 2005

146

Linkage disequilibrium across two different single-nucleotide polymorphism genome scans

Juan Manuel Peralta, Thomas D Dyer, Diane M Warren, John Blangero, Laura Almasy

Journal:

Year:

2005

Language:

english

File:

PDF, 1.89 MB

english, 2005

147

Modeling the effect of a genetic factor for a complex trait in a simulated population

Mathieu Bourgey, Anne-Louise Leutenegger, Emmanuelle Cousin, Catherine Bourgain, Marie-Claude Babron, Françoise Clerget-Darpoux

Journal:

Year:

2005

Language:

english

File:

PDF, 485 KB

english, 2005

148

Identification of polymorphisms explaining a linkage signal: application to the GAW14 simulated data

Ming-Huei Chen, Paul Van Eerdewegh, Josée Dupuis

Journal:

Year:

2005

Language:

english

File:

PDF, 506 KB

english, 2005

149

A comparison in association and linkage genome-wide scans for alcoholism susceptibility genes using single-nucleotide polymorphisms

Yen-Feng Chiu, Su-Yun Liu, Ya-Yu Tsai

Journal:

Year:

2005

Language:

english

File:

PDF, 671 KB

english, 2005

150

Whole-genome association studies of alcoholism with loci linked to schizophrenia susceptibility

Junghyun Namkung, Youngchul Kim, Taesung Park

Journal:

Year:

2005

Language:

english

File:

PDF, 2.56 MB

english, 2005

151

Impact of non-ignorable missingness on genetic tests of linkage and/or association using case-parent trios

Chao-Yu Guo, Jing Cui, L Adrienne Cupples

Journal:

Year:

2005

Language:

english

File:

PDF, 443 KB

english, 2005

152

The quantitative trait linkage disequilibrium test: a more powerful alternative to the quantitative transmission disequilibrium test for use in the absence of population stratification

Lorena M Havill, Thomas D Dyer, Dawn K Richardson, Michael C Mahaney, John Blangero

Journal:

Year:

2005

Language:

english

File:

PDF, 490 KB

english, 2005

153

Analysis of binary traits: testing association in the presence of linkage

Gudrun Jonasdottir, Juni Palmgren, Keith Humphreys

Journal:

Year:

2005

Language:

english

File:

PDF, 471 KB

english, 2005

154

Selection of single-nucleotide polymorphisms in disease association data

Jungnam Joo, Xin Tian, Gang Zheng, Jing-Ping Lin, Nancy L Geller

Journal:

Year:

2005

Language:

english

File:

PDF, 511 KB

english, 2005

155

Microsatellite linkage analysis, single-nucleotide polymorphisms, and haplotype associations with ECB21 in the COGA data

Aldi T Kraja, Ingrid B Borecki, Michael A Province

Journal:

Year:

2005

Language:

english

File:

PDF, 951 KB

english, 2005

156

A regression based transmission/disequilibrium test for binary traits: the power of joint tests for linkage and association

Emma K Larkin, Kevin C Cartier, Courtney Gray-McGuire

Journal:

Year:

2005

Language:

english

File:

PDF, 921 KB

english, 2005

157

Comparison of linkage and association strategies for quantitative traits using the COGA dataset

Matthew B McQueen, Amy Murphy, Peter Kraft, Jessica Su, Ross Lazarus, Nan M Laird, Christoph Lange, Kristel Van Steen

Journal:

Year:

2005

Language:

english

File:

PDF, 555 KB

english, 2005

158

Identifying genetic variation affecting a complex trait in simulated data: a comparison of meta-analysis with pooled data analysis

Xiaodong Wu, Donghui Kan, Richard S Cooper, Xiaofeng Zhu

Journal:

Year:

2005

Language:

english

File:

PDF, 440 KB

english, 2005

159

Comparing strategies for association mapping in samples with related individuals

Catherine Bourgain

Journal:

Year:

2005

Language:

english

File:

PDF, 454 KB

english, 2005

160

Using mixture models to characterize disease-related traits

Tao Duan, Stephen J Finch, Kenny Q Ye, Gary A Chase, Nancy R Mendell

Journal:

Year:

2005

Language:

english

File:

PDF, 586 KB

english, 2005

161

Fine-scale mapping in case-control samples using locus scoring and haplotype-sharing methods

Keith Humphreys, Mark M Iles

Journal:

Year:

2005

Language:

english

File:

PDF, 2.20 MB

english, 2005

162

Local false discovery rate and minimum total error rate approaches to identifying interesting chromosomal regions

Ritwik Sinha, Moumita Sinha, George Mathew, Robert C Elston, Yuqun Luo

Journal:

Year:

2005

Language:

english

File:

PDF, 539 KB

english, 2005

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